![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa017857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 137aa MW: 14966 Da PI: 8.4895 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 149 | 1.2e-46 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l ++k+e Lsa017857 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQVDLTYAKSE 107 7**********************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.295 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-45 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHPHQ 60 REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQVD LTYAKSELSK YQNHNHNLNG 120 SATQGLIAAA AAAAAAA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002266137.1 | 3e-77 | PREDICTED: LOB domain-containing protein 6 | ||||
Refseq | XP_010646844.1 | 3e-77 | PREDICTED: LOB domain-containing protein 6 | ||||
Refseq | XP_010646845.1 | 3e-77 | PREDICTED: LOB domain-containing protein 6 | ||||
Refseq | XP_010646846.1 | 3e-77 | PREDICTED: LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 1e-68 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | D7SSJ3 | 3e-77 | D7SSJ3_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_00s0340g00090.t01 | 8e-77 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65620.4 | 1e-67 | LBD family protein |